An alternative look at proteins
Following up on my Proteins of Interest, Part II analysis, I am taking a second, simpler look at the peak area data. This time, I am simply taking the total peak area for each protein and averaging across each treatment:
Then, using Galaxy, join the proteins that are up/down regulated by 5x with the annotations:
Added column names:
And counted the number of proteins in this list, which is 76. This file is found in the DNR_Geoduck repo
Then, using Galaxy I joined my two datasets to identify which proteins were found to be diff. expressed in both the treatment/site analysis and the treatment-only analysis. Using Revigo I did a quick visualization:
Expressed more in Bare patches:
Expressed more in Eelgrass patches: