Pecan! Lesson of the month: Proteomics bioinformatics is very intense.

As mentioned earlier today, Pecan has been running for ~2 weeks on Emu, and it looks like it will take another 7-10 days longer (here’s hoping!), given the current rate. To catch everyone/myself up on the bioinformatics steps taken to start my Pecan run, I’ve retrieved and posted my Jupyter notebooks and posted them to a new GitHub repository:

• My new Geoduck Proteomics repo
• Jupyter Notebooks:
  • In silico digest of a background proteome using ProteinDigestionSimulator
  • General file prep for Pecan
  • Executing Pecan